RnoEX0100513 @ rn6
Exon Skipping
Gene
ENSRNOG00000009346 | Zbtb26
Description
zinc finger and BTB domain containing 26 [Source:RGD Symbol;Acc:1308561]
Coordinates
chr3:21687933-21697620:-
Coord C1 exon
chr3:21697443-21697620
Coord A exon
chr3:21696569-21696691
Coord C2 exon
chr3:21687933-21690018
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTTTGAATTTACGTCTAAAGGGA
3' ss Score
4.39
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TGGGGAGTCTCAGGATGCTCCAGGGACCGCCTCCTGGGACCCTGTACATACGGCCCTGTAGCTGGCCAGGAAGCCAGACTCTGGCATTTTGTAAAAAGTGCAGCAGTTAAGGCCGGCAGAAAACTGAACGGCGGGAGCTAGCCAAGGCAAGGCCTTCAGTGCCAACCGCGAGACTACT
Seq A exon
GGATAGCCACAGGCAGCTGTCCAGCGTAAGAGTTGGAAACTCAAATGTGGAGATCAGCCTAAGCTTCGTGGCATGTGGGCCATGAGAAGAGTTGGCATCATAGAGGGAGCACTGAAAAAGAAG
Seq C2 exon
GTCTGCCAAAATGTCTGAAAGATCAGATCTCCTTCACTTCAAGTTTGAAAATTATGGAGATTCAATGTTACAAAAAATGAACAAATTAAGAGAAGAGAATAAATTTTGTGATGTTACAGTTCTCATAGATGATGTTGAGGTGCAGGGGCATAAAATTGTTTTTGCTGCAGGTTCCCCCTTCTTAAGAGACCAATTTTTACTGAATGATTCCCGAGAGGTGAAAATCTCCATATTACAGAGTTCTGAAGTGGGGAGACAATTACTCTTATCCTGTTATAGTGGTGTGCTGGAATTCCCTGAGATGGAACTGGTAAATTACTTGACTGCTGCAAGTTTTCTTCAGATGAGCCACATTGTAGAACGGTGCACACAGGCGCTGTGGAAGTTTATAAAGCCAAAACAACCAATGGATAGTAAAGAGGGATCTGAACCACAGAGTGCTTCTCCCCAGTCGAAAGAACAGCAGGGAGATGCCAGAGGCTCTCCCAAACAGGACTTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009346-'2-2,'2-1,3-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.036 C2=0.225
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0065126=BTB=WD(100=23.4),PF059887=DUF899=WD(100=17.8),PF0009621=zf-C2H2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
ENSRNOT00000012433fB16759
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAACTGAACGGCGGGAG
R:
GGTCTCTTAAGAAGGGGGAACC
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]