RnoEX0101042 @ rn6
Exon Skipping
Gene
ENSRNOG00000027955 | Zfp133
Description
zinc finger protein 133 [Source:RGD Symbol;Acc:1566283]
Coordinates
chr3:138609099-138610668:+
Coord C1 exon
chr3:138609099-138609225
Coord A exon
chr3:138610219-138610271
Coord C2 exon
chr3:138610573-138610668
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCTCTTCTATCCAGGCC
3' ss Score
10.76
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GTACACATGGCATTCAGAGATGTGGCTGTGGATTTCTCCCAGGAGGAGTGGAGCCTGCTGAGCCCTGCTCAGCGGTCCCTGTACAGAGAGGTGATGTTGGAGAACTACAGCAACCTGGTCTCTCTGG
Seq A exon
GCCCAGCCTAGGGGTGATGCCACCCCCTTTTCAAGGAAGGTCTTTCTTCCTCA
Seq C2 exon
GAATTCCATTTTCAAAACCAAAGCTCATCACCCAGCTAGAGCAAGGGAAAGAGACATGGCGAGAGGAGAGAAAATGTCCACAGGTTGCTTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027955_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000031623fB16872
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGTGGATTTCTCCCAG
R:
GCTGGGTGATGAGCTTTGGTT
Band lengths:
142-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]