RnoEX0101103 @ rn6
Exon Skipping
Gene
ENSRNOG00000058932 | Zfp202
Description
zinc finger protein 202 [Source:RGD Symbol;Acc:1562294]
Coordinates
chr8:44047592-44062393:+
Coord C1 exon
chr8:44047592-44047703
Coord A exon
chr8:44055567-44055709
Coord C2 exon
chr8:44061892-44062393
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTGTTGCATGTCTTTTGCAGGAA
3' ss Score
10.44
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACGTGTTCCGACCCGCTGGGCCCCGCGCGACTCGGATCCCGCTCCGCTCTTTTGGCCGGGAGTGGGTGGGGGAGCACCGGGCAGGGGAGGAGCCGCTGGAGCCGCGGGAGAC
Seq A exon
GAATCTGAATAAATGGCTCGTCACCCTTAAATAAAGTGCTGATGACATACCAAAAAGAAATGATTCCATCCATGATCTGGTGAATTTATTAAGACTATGTACAAGAACATGAGTGAATCTAAGGCATTTATATCACAGAAAAG
Seq C2 exon
GTCCCTTAGGAGGAACCCCTTGAGGTACCCGGTCTAGAATACATTAATGCCCTTGTGAGTGCTAAATGGTGTGATAACACCCAAGAGCCAGGAAATGGCGACAGCCTTGGAGCTAGAGGACCAAGATCTTTGGGAAGAAGAAGAAGAAGGAGTTCTGATGGTGAAACTGGAGGATGATTTCACCTGCGGGCCAGAATCTGCCTTGCAGGGCGATGATCCTGTACTGGAGACCTCTCACCAGAATTTCCGATGCTTTCGCTACCAGGAAGCATCTAGCCCTCGAGAAGCCCTCATCAGACTTCGAGAGCTTTGTCATCAATGGTTGAGGCCAGAGAGGAGAACAAAGGAGCAGATCCTTGAGCTGCTTGTGCTAGAACAGTTCCTCACTGTCCTACCTGGAGAACTGCAGAGCTGGGTGCGAGGCCAACGGCCAGAGAGTGGCGAGGAGGCAGTGACGCTGGTGGAGGGTTTGCAGAAACAACCCAGGAGACCAAGGCGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058932_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.206
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=69.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTTTGGCCGGGAGTGG
R:
CGCAGGTGAAATCATCCTCCA
Band lengths:
254-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]