RnoEX0101153 @ rn6
Exon Skipping
Gene
ENSRNOG00000025937 | Zfp26
Description
zinc finger protein 26 [Source:RGD Symbol;Acc:1565847]
Coordinates
chr8:21458355-21466558:-
Coord C1 exon
chr8:21466090-21466558
Coord A exon
chr8:21465711-21465829
Coord C2 exon
chr8:21458355-21458507
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACAAAAATTTTTCTTTCCAGAAA
3' ss Score
8.55
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCCGTCTTTCTAGACCGTCTAACTATCAACGATTAGAATTTAACATGGTATCCAGATAATAAAAATAAAAATAAAGTGGTTCAGTGGAAGTGATAGGCTGGTTCACAGACCTGACACTTTATCTGCCCAGGAAGTGCAGAAACTAAGAGGAGGTGGGGAAAGTTTGTGAGCCTCCTGAGACCCCGTACTTCCCGGTCTGTGTTTAACTTTGCTCTGGGATTGGTCGTCGGGAAAGCTGTTCTCGCCCAGAAATCTTGCTCAAACTTCAATTTCATCCTTTACTGGGTTTTTAACCCCCGCTACGGAATCAATCGGCATCCAGGTCCCGGGAACCGAAATTTCTATTCCGGAAGGATTCCGACTCGATAAACGGAAGTGAACCGCGGCTCGCCTCCGTCTCTTCCGGTGTGGCTTCGCGCGGCCCCGTTCTCTTTTTCTCGACAGTAGCAGGCCGGCTGGGCGGGTTCTG
Seq A exon
AAAGAAAAGAATTTCCGCCGCCGTTGGAGTCCAGCTTGGCTCCCCATAGCCCCACGAACCTGGCCATCCTCTTCACTGTGAGCAGTGGGAGGAATTTGATGGAACAGAAAAGTTCCAGG
Seq C2 exon
GAGTCTAAGTCATCCAGATTAAAGAGAAATGAACATCGTCATTTTCCACTTTGATGCATAAGTTTTCCTGACGTGTTCTTGGAGTCACAGGAGAATTTGGTCACATATTTTACCATCAGACTAAAACGATGGACATTACTAGTTTGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025937_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAATCAATCGGCATCCAG
R:
TGACTCCAAGAACACGTCAGG
Band lengths:
255-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]