RnoEX0101157 @ rn6
Exon Skipping
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21524862-21543109:-
Coord C1 exon
chr8:21543009-21543109
Coord A exon
chr8:21542687-21542784
Coord C2 exon
chr8:21524862-21524962
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGAATTGCTTTCCTCCCCAGAAA
3' ss Score
7.51
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AATGGAAGTGACGTCACGACCAGTACCCCCCCTTTTCTGCGAGCTCTGAGACCTTCTCGGCGTTTGTCCGAGGGCTCTCCACACAGCTCGGTGAGGATTCG
Seq A exon
AAAGAATAAACTTTCCGCCATTGGTATCACATTGAGACGCTGTTTTCCATTCTTGGACCGAGCGATTCTGTTTGCTGCAGCCGAGCTTTGGCTGAAAG
Seq C2 exon
GACTTCTAGATCTTTACGGAACAGAATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGTCACGACCAGTACCC
R:
AGTCCTATTCCTGTGGTAGGCA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]