RnoEX0101161 @ rn6
Exon Skipping
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21524796-21542784:-
Coord C1 exon
chr8:21542687-21542784
Coord A exon
chr8:21541478-21541604
Coord C2 exon
chr8:21524796-21524962
Length
127 bp
Sequences
Splice sites
3' ss Seq
GACATCAGATCCCATTACAGATG
3' ss Score
3.95
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAGAATAAACTTTCCGCCATTGGTATCACATTGAGACGCTGTTTTCCATTCTTGGACCGAGCGATTCTGTTTGCTGCAGCCGAGCTTTGGCTGAAAG
Seq A exon
ATGGTCGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAATCAGTGCTCTTGACCACTGAGCCCTCTCTCAGCCATCTGTCCAGCCCCGCAGTCTGTACTTTTAACTG
Seq C2 exon
GACTTCTAGATCTTTACGGAACAGAATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAGATAGACCAGTACCTCCAGTACCTCCAGTAAATGAAATAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037_MULTIEX1-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTCCGCCATTGGTATCACA
R:
TCATTTACTGGAGGTACTGGAGGT
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]