RnoEX0101163 @ rn6
Exon Skipping
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21522749-21542784:-
Coord C1 exon
chr8:21542687-21542784
Coord A exon
chr8:21524796-21524962
Coord C2 exon
chr8:21522749-21522837
Length
167 bp
Sequences
Splice sites
3' ss Seq
ATGATTATATTTCCCCATAGGAC
3' ss Score
10.46
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAGAATAAACTTTCCGCCATTGGTATCACATTGAGACGCTGTTTTCCATTCTTGGACCGAGCGATTCTGTTTGCTGCAGCCGAGCTTTGGCTGAAAG
Seq A exon
GACTTCTAGATCTTTACGGAACAGAATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAGATAGACCAGTACCTCCAGTACCTCCAGTAAATGAAATAGAAGAG
Seq C2 exon
GCCTTCTTCCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGAAGGAACGGTGACTGACAACCAGGCAAACTGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037_MULTIEX1-3/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAATAAACTTTCCGCCATTGGT
R:
TGGTAACAGTTTGCCTGGTTGT
Band lengths:
186-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]