RnoEX0101164 @ rn6
Exon Skipping
Gene
ENSRNOG00000034037 | Zfp266
Description
zinc finger protein 266 [Source:RGD Symbol;Acc:1308643]
Coordinates
chr8:21522749-21524962:-
Coord C1 exon
chr8:21524796-21524962
Coord A exon
chr8:21523516-21523670
Coord C2 exon
chr8:21522749-21522837
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTAACGATTGATGTGAACAGGAC
3' ss Score
4.92
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACTTCTAGATCTTTACGGAACAGAATATTTTCTGTGTCCTTCCCTGCTCTGCTCATGCCTACCACAGGAATAGGACTTCCTAATAATTTGCTGAAAGAATTAAAGAATAAGCCAGACCTGAGATAGACCAGTACCTCCAGTACCTCCAGTAAATGAAATAGAAGAG
Seq A exon
GACTCCATATAACCCTGTATTAAGAGGAATGGAGATTGCCTCTGTCCACTTAGATTCATAAGCTGTCCCGAAGTGATCTTGGCCTCAGGGAAGGGAGTGTTCAGGCACATTTCACCATCAGCATCACGGGATGGCAGCCATTGACTTGTCCCATG
Seq C2 exon
GCCTTCTTCCTAGAGAGCCTATCTACGTCTACGAAGCAAACATAGAGGTAGAAGGAACGGTGACTGACAACCAGGCAAACTGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034037_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTAGATCTTTACGGAACAGA
R:
TTTGCCTGGTTGTCAGTCACC
Band lengths:
246-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]