RnoEX0101211 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78908446-78910588:+
Coord C1 exon
chr8:78908446-78908580
Coord A exon
chr8:78908934-78909034
Coord C2 exon
chr8:78910281-78910588
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTCTGTACCTCCAGCTT
3' ss Score
7.29
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
Exon sequences
Seq C1 exon
AAAAAGGGAATACATCGTTGCACCAAATGCAGACTGCAATTTTTGACATGCAAAGAGAAAATGGATCACAAGACTCAACATCACCGAACATTTGTAAAACCCAAGCAACTAGAAGGACTGCCCCCTGGAACAAAA
Seq A exon
CTTTTTTAGAGTGCCTAATGCTACAGGTTCCCAGAAGTTTGTTGAAGTTGTTATTGCTGAGTCTACTCTCAACGAAGCAAATTTTGCTGCTGGACAGCATT
Seq C2 exon
GTTACTATTCGAGCTTCCGTTGCACCTCTTCAATCGGGATCTTCAGTTACACCTTCTATCAGTGCAAGCACTTCTACCCTCCAGCTCTCACCTCCAAGGACTGAAAATGTAACTGCTAAAAATCACGTGAAACTGAATACAAGTACACCAAATACAACCATATCTGATCCCAGTAAAACTAATGAGATCAAGTCTAATGGAAGTAAATCTAAAAACAGGTCAAAAGTCTCCAATATGCAGAAGAAACAAAGCACATTGTCTAATAGTAATAAAAAAAGTAAAGTGAACACAGCACTAAGAAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX2-4/14=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.000 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000089335fB16904
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAATACATCGTTGCACCA
R:
ACATTTTCAGTCCTTGGAGGTGA
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]