RnoEX0101225 @ rn6
Exon Skipping
Gene
ENSRNOG00000003218 | Zfp286a
Description
zinc finger protein 286A [Source:RGD Symbol;Acc:1561950]
Coordinates
chr10:49192415-49195222:-
Coord C1 exon
chr10:49195137-49195222
Coord A exon
chr10:49194924-49195043
Coord C2 exon
chr10:49192415-49192529
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGCATTTCTTTGTCCACAGAGC
3' ss Score
10.1
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CACTCTCTTCCCAGGATTCTCTCCTTTCCCAAGAGAAGAGTGCAGAAGGAGACGTGGCTGCTCTGAGACTCACAGCCAGACCCCAG
Seq A exon
AGCCCATCTAGAGACCTGAGTTCTAATTCTAAGAAACTAATGGACTCAGTAGGAAATATTTTCTACTTACCCATAGTACCTCTCTTCTCCATCTAGTATTTCTTGTCTCTCTCCAGGCAG
Seq C2 exon
GAAGCCGTGACATTCAAGGACGTGGCCATGGACTTCACACCTGAGGAATGGGGGAAACTGGATCCTGTACACAGGGACGTGATGCTGGAGAACTACAGGAACCTGGTCTCACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003218_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=0.323 C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
ENSRNOT00000084418fB16909
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCTTCCCAGGATTCTCTCC
R:
AGTGAGACCAGGTTCCTGTAGT
Band lengths:
198-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]