RnoEX0101238 @ rn6
Exon Skipping
Gene
ENSRNOG00000001094 | Zfp316
Description
zinc finger protein 316 [Source:RGD Symbol;Acc:1311647]
Coordinates
chr12:13346703-13354101:+
Coord C1 exon
chr12:13346703-13348501
Coord A exon
chr12:13353259-13353315
Coord C2 exon
chr12:13353725-13354101
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTCTCTTTCTTGACTTACAGACG
3' ss Score
9.4
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GGGGGTCACTACCCTTCTCCACCATCATGAGATCCAGGGAGGGTCCAGTGGGCAAGAGGACGGGCTCGCGGCACATCCTGGCATGAAGGTAGACCCAGGCTGTCGTCTGGAGGAAAGAGATGCTTGCTGAGGCTGGCATGATGTCGTGGACATCTGCAAGGGTGGGCAGGGGTCTCCTGAAACATAGAGAAGCAGGTAATACAGGGATGCTCGTTGCAAGTAGCCATAAACATCCTCCATGCATATGGGGGTGCAGCGCAGCAGCCCCCTGTCTACACTCAGAGCTCCGTTACGCCCCATGACCGGAAGTGCCCCCCCGTGGGCGCGGACAAGGCGGGGCCGGCAGGCTGCACTTCCGGTGCCCACGCGCCGCCGCCTCCTCCGCCGTCGCGCAGCTCGCGGCCGTCACTTTGTGTAGTGCGGGGGGGGTCCCCGGTGGTCACAGCCCCCCCACAAGTCCGTGTCTCGCTCCGGCTTGGCCGGGCCCGGGCGCGCGCGCG
Seq A exon
ACGGGGTTCTGAAAGGAAACAAGATCCTCTTCGGGCCCTGCATCTCCCCCAAGCCTT
Seq C2 exon
GCCACACGGAGGCTCTCTCCCGGGGATGATGGCTGCCCTTCATACTGCTCCAGACTCCCCAGATACCCAACTGGAGCCAGCAGAAGATGGCTCGGAATGTGATGCTGAGCCCGAGGAGGAAGAGGAAGAAGAAGAGGAAGATGACGAGCAGGGGAGAGAGGAGGAAGAGGTAGTAGTAGAAGAGGAAGTGGCCACACAGGTGCAGGAGGCGGCGGGAGTGGAAGTGGAGGCCAACTCAGCGGACACTGGTGGTGGCGATGATGGCGATGACGGTGATGTGGAGGAGGTGCTGGCAGAGGAGCAGACTCTGAGCTTAGGGACCCAGAAGCGGCTTAGCAATGGTGCTGATGCCAAGTCACCAGCTCTTCAAGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001094_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTTTGTGTAGTGCGGGG
R:
GCAGTATGAAGGGCAGCCATC
Band lengths:
144-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]