RnoEX0101240 @ rn6
Exon Skipping
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19867461-19875164:+
Coord C1 exon
chr8:19867461-19867752
Coord A exon
chr8:19870543-19870621
Coord C2 exon
chr8:19875053-19875164
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTAAATTTCAACAGGAT
3' ss Score
10.48
5' ss Seq
TAGGTGCGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTCATGGAGGCTATCAAACTCCATTTCCCAAGATGCACTCCGAGAAGGTTTCACAGTATAAATGGCTAATGAAGTTTCGCGAGATTTCGAAGGAAGTGAAGTAGAAGCCATTACTGTCAAGGAACTACTTTAATAAGACACATCTGCTAAAGAATGTTTGGGGTTTCTCCCGTGTTTGGTCGGGACCCTTCTGTTCCCCGAAGCGTTCTGAAGCATTCGGGGCCTTTAGGTGAACTTCTAGTTCTTCCGCCTTAGCTGCGGAGACTTCCGCTTCCTGCATTCCACCCTCTG
Seq A exon
GATCTCACAATGTAGTCCAGACTGGCTTTTCAAACTTAAAATTTTTATGTTCTGACTTTCTTCTGTCCTGGGATTATAG
Seq C2 exon
ACAAGATTGCGATCCAGTTTCCAGTGGTGCTTGTTGCTGACCCAAAGCAGAGTTTCTACGAGGTTGCCTATGCTTGGTGGAGACAGGATCCAGGGAGAAAGAAAGGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGGCCTTTAGGTGAACTTC
R:
CCTGGATCCTGTCTCCACCAA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]