RnoEX0101244 @ rn6
Exon Skipping
Gene
ENSRNOG00000006684 | Zfp317
Description
zinc finger protein 317 [Source:RGD Symbol;Acc:1565419]
Coordinates
chr8:19883715-19886412:+
Coord C1 exon
chr8:19883715-19883775
Coord A exon
chr8:19885412-19885538
Coord C2 exon
chr8:19886208-19886412
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTTCTCTTCCACCAGATT
3' ss Score
10.65
5' ss Seq
AAGGTGCTA
5' ss Score
2.48
Exon sequences
Seq C1 exon
TCCCTGGCAAAAGCATTCTGTTCTTTGCCTTCATGAATGAATCTGACTTCTTGAATCTCAT
Seq A exon
ATTCAGTATATCTGGTTGAGGTCTTTGATCAATGTGGAGTGGAGTTTTTTGCAAAGTGAAAAGTTTCTATCTATTTGGAGTCTTTTTACATGCAGCCACTGAGTTTGACCAGCATCATTAATTGAAG
Seq C2 exon
GTTAATAATCTGTCTGATTATGAATCAAGAGGAAATGTCAAGATACCAAATTCAGTGTTCTCACTAAGTATGAGAGACAGCCTTTGAAGATCCCCCTTGTGGCAGTTGTCAGCTTGGAAAAGCAGTGCTTCTTCAAGTACTCCCACATTCAGCTAAGGTTACTGTGCCCCACAAATGGCTACCATCTGTCTGTCTCCCAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006684_MULTIEX1-5/5=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGGCAAAAGCATTCTGT
R:
GATGGTAGCCATTTGTGGGGC
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]