RnoEX0101297 @ rn6
Exon Skipping
Gene
ENSRNOG00000029205 | Zfp354c
Description
zinc finger protein 354C [Source:RGD Symbol;Acc:69405]
Coordinates
chr10:36322324-36324689:-
Coord C1 exon
chr10:36323482-36324689
Coord A exon
chr10:36322947-36323218
Coord C2 exon
chr10:36322324-36322408
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTAGCGCATCTGATACCAAGTTA
3' ss Score
-2.62
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATTACCATAGTTAGTGATGTGGGCTACACCAGATTCTCCTAGAGTTTTGGTTTGGCTTGGTTTTGATTTTAGTCCGGCTATATAGCCCTCGCTGTCCTGCAACTCCATTTGTGTCAAGCTGGCCTGGTACCTATGGGTACCTAGCTCCTAAACCCTAAATTCCGGTTTTGTCCTGTCACATCATTTCATCACCCTTCTAGCAAACAAGTCTGAGAACTGACTGAGAGAGGCCAGGTTTGCTGTGTTTGCAATGCACCACACTCCGACTCAGCTTTCAGAACTCTCCTGGCCCCGGTGCCTTTTGGGATGTGTAGTCAGAGAGGATTTGAGGCATGCCGGGAATAGTAGTTCTCTGGGGCTTCTCCCGGTGGCGGGGCTGCTCGCGGCGTTTTGGGGGGCTCCTGGCCGAGGTGATTGTGATTGTGCCAGAAGAGCGCGTCTGGGGTCGACATCCTCGTGACCGCTCGTACTGAGAGCGGCGGAAGCGAGCGCCGGCGTCC
Seq A exon
TTACAGGCCCCTTGCGCCTTCATTGTGCCTATGGTGCAGATGAAGAAACCAAGGCACAGTGTGACCCGAGCATTCGCTGAGCCTGGATAGGAGCCGTGGACTGGAAGCAGAATTTACTTCCCATCTGTGCTGCTTGCTATGTCTTGTCACTTTGGGTAGACTGGAATCTCCTTGACTGTCCACCTCAGCCACGTCGACAGCACAGCCCCACCTCTGCTTCACAGAGGACCAGTTCCAAGAATTCCCAAACAGCCAACACTCAAGTTCTTGAG
Seq C2 exon
ACATACTTGGTCAGCACTCAGCTTTCCTTTGGCAGGAGAACTAAGAAGGGAAATGGCTGTGGATTTGCTGGCTGCTCGAGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029205_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCAGAACTCTCCTGGCC
R:
GCAAATCCACAGCCATTTCCC
Band lengths:
298-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]