RnoEX0101384 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21490255-21492235:-
Coord C1 exon
chr8:21492135-21492235
Coord A exon
chr8:21490737-21491063
Coord C2 exon
chr8:21490255-21490337
Length
327 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTATGCATCTTGTAGGTA
3' ss Score
8.19
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
AGATACTCAGTAAGTAACAGTAAGTGCACATTCTGAGTTTGCCTTGTCCCTTTCCTGTGAAGGGGTTAGTTAAGCCTTTCACTGCTTTCAAGTGTTTCCAG
Seq A exon
GTAGAGCCCACAGGAGCCAGAGCAGAGTGTCAGAACCCTTGGGACTAGACAGCTGTAAGCTGCCATGTGGATGCTCAGAACTGAACTTGGGTCCTCTGGAAAAGAATCCAGTACTCTTAGCCACTTAGCCATCTCTCTATCCCCCAAAATTTTTCATTTTTGGGATAGGGCCCTATGTAGCTCATGGAGGCCTCAAATTTGCTAGGAACCGGTTGATGGCCTTGACTTTCCGATCCTCTTGCTTCTACCACTTGAGCTGGGATAACAGATATGCATCACCACACCTAATTTTTTTGCTGAGATGGAAGGTGGCCCTGCATGTGCCAG
Seq C2 exon
GTCCTTCAGGGGACTCAGTCTGCCTTCAGGAAGAAAAAGTATCAGCCGAAATGATGTTGGTTGATTGCCTGACAAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624-'4-4,'4-3,5-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.310 C2=0.036
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000077465fB16939
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTCAGTAAGTAACAGTAAGTGCA
R:
CTGATAATTTGTCAGGCAATCAACCA
Band lengths:
182-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]