RnoEX0101386 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21492774-21509604:-
Coord C1 exon
chr8:21509548-21509604
Coord A exon
chr8:21502015-21502165
Coord C2 exon
chr8:21492774-21492923
Length
151 bp
Sequences
Splice sites
3' ss Seq
GACTCTAATGTCATATTCAGTTT
3' ss Score
5.27
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
AAAGAAATGAATTTTTGCCGGAGTAGTTGGAGTGACCTTGCGATTTCAGCACCTCTG
Seq A exon
TTTTGTTTTGAGACAGGATTCAGGCTGGCTTTGAACTCCCTGTGTAGCTGAGGATGACCTTGTACTCACGGACTTCCTATCCCCACCTCCTGAGTGCTGGGATTCCAGGTCTGCATCACCCGGATGGATCTTACTCAGATTACCACTTTCT
Seq C2 exon
GAATGCTAACAGTTGTGTACACCGGTGATAGAGCGCCACTGTTCGCTAAAACTCATCAGCTGCACTAAAGCGAGGCTTGCCTCAGTGAAAGGAGTCCTCATGCACACTTCCCGTGTTACAGGATGGCAGCTCCTGATTCATTGTCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624_MULTIEX1-1/3=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAATTTTTGCCGGAGTAGTTGG
R:
CGTGGGACAATGAATCAGGAGC
Band lengths:
202-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]