RnoEX0101398 @ rn6
Exon Skipping
Gene
ENSRNOG00000050562 | Zfp449
Description
zinc finger protein 449 [Source:RGD Symbol;Acc:1584453]
Coordinates
chrX:73390903-73397647:+
Coord C1 exon
chrX:73390903-73390942
Coord A exon
chrX:73392629-73393075
Coord C2 exon
chrX:73397443-73397647
Length
447 bp
Sequences
Splice sites
3' ss Seq
TCATGTTTTCCTGTCTTCAGCTG
3' ss Score
9.08
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTTGCCGGTGAGCTCGGGCGAGCCGTGGGCGCAGAGGCG
Seq A exon
CTGTAAGTGGCCCCCCCCAGATTCTTACAGAGAGGAAAGAGCTGGAATCTGAACCATAGACCCCAGATAAACTGTAAGCTTCTAGAAGAGGTGATGGCTGTGGCCCTGGGCCGTGCAATCCAGGCCTCCTTGAATCAGGGCTCTGTGCTGCAAGAGTATGACACAGACTGTGAAGTTTTCCGACAGCGTTTCAGGCAGTTCCAGTACACAGAAGCCGCTGGGCCTCATGAAGCCTTCAACAAACTCTGGGAGCTTTGCTGTCAGTGGCTGAAGCCAAAGATGCGTTCTAAGGAACAAATCCTGGAACTGCTTGTGCTAGAGCAATTCCTAACTATTCTGCCCACAGAAATAGAGACCTGGGTGAGGGAACACTGCCCAGACAATAGAGAAAGAGTTGTGTCACTCATTGAAGACTTACAAAGAGAGCTTGAGATACCAGAACCACAG
Seq C2 exon
ATTGACATGGATGACATGCTCTTGGAAGAACTGGCACCAGTTGGAACAGTACCCATGCCACCCAACTTGCATCTGGAGGAACCTTCACTCCAGGTGATGGCGCCTGTTCAGGAGCCCCCAGTGCCAGATGCCTGGATTCCACAAGCTGGGCCACAGGATCTGAACTACAGCACTGATGGTGAATGTCAGTCCTTTCTGGATCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050562_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion (Ref, Alt. ATG (<=10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.008 C2=0.681
Domain overlap (PFAM):
C1:
NA
A:
PF0202312=SCAN=PU(97.9=79.7)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGCCGGTGAGCTCGG
R:
CCAGAAAGGACTGACATTCACCA
Band lengths:
239-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]