RnoEX0101427 @ rn6
Exon Skipping
Gene
ENSRNOG00000007707 | Zfp467
Description
zinc finger protein 467 [Source:RGD Symbol;Acc:1561603]
Coordinates
chr4:78070877-78073876:-
Coord C1 exon
chr4:78073763-78073876
Coord A exon
chr4:78071224-78071500
Coord C2 exon
chr4:78070877-78071136
Length
277 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTTTTGACTGCTCAGGGG
3' ss Score
8.01
5' ss Seq
GAGGTTGCA
5' ss Score
-5.84
Exon sequences
Seq C1 exon
GGCCTGAGACCCCTGGCCAGAAAGAAGGTATCCACACAGAACAAGCTGAAGCTCCTTGTATGGGCAGCCAGGCCTGTATCCCACAGAAGGCCGAGCCTGCAAGCTCTGTCCCAG
Seq A exon
GGGAGGAATGGATGATTCGGAAAGTGAAGGTAGAGGATGAGGACCAGGAGGCAGAGGAGGAGGTGGAATGGCCCCAGCATCTCTCCTTCCTTCCCAGTCCTTTTCCTACTCCTGACTTGGGTCAGTTGGCTGTTGCATACAAACTGGAGCCAGGGACTCCGGGGACACTAGGTGGAATCGCGCTGTCCGGGTGGGCGCCGATCCCTGAAAAGCCTTATGGCTGCGAGGAATGCGAGCGGCGATTCCGGGACCAGCTAACTCTGCGGCTGCATCAGAG
Seq C2 exon
CCACCGCGGAGAGCGTCCCTTCCCGTGCTCAGAGTGCGATAAGCGTTTCAGCAAGAAAGCCCACCTGACCCGTCACCTGCGCACTCACACTGGCGAGCGTCCCTACCCGTGCGCCGAATGCGGCAAACGCTTCAGCCAGAAGATTCACCTAGGCTCGCACCAGAAGACCCACACTGGCGAGCGGCCCTTCCCCTGCACGGAATGCGAGAAGCGTTTCCGCAAGAAGACGCACCTGATCCGCCACCAGCGTATCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007707_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.343 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF032269=Yippee-Mis18=WD(100=16.5),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1),PF0009621=zf-C2H2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.1)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTCCTTGTATGGGCAGC
R:
CGGATCAGGTGCGTCTTCTTG
Band lengths:
307-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]