RnoEX0101581 @ rn6
Exon Skipping
Gene
ENSRNOG00000038622 | Zfp628
Description
zinc finger protein 628 [Source:NCBI gene;Acc:100359484]
Coordinates
chr1:72468558-72472804:-
Coord C1 exon
chr1:72472704-72472804
Coord A exon
chr1:72470474-72470580
Coord C2 exon
chr1:72468558-72468658
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCTAATTCTCCACCTCCAGGTT
3' ss Score
8.59
5' ss Seq
GGGGTACGT
5' ss Score
7.73
Exon sequences
Seq C1 exon
CCGCGGGTCCCCCAGCGCAGTGCCGGGCCCCGCTTCCCGTCAGCCCCCGCGGGAAGGCCCTGGGGTTCTCTTTGATCCCCCCTCCCCGACCGGGGCCACAG
Seq A exon
GTTTAGAAGGATCCAGCCCAAAGGCTAATGTGGTCACAGAAAAGAGTGTCAGCCATCTGCAGCTAGGAGATATGCTTAAAGGAAAGACTCAGCAGCAAGGAGCTGGG
Seq C2 exon
GTGTGATGGCCGGCTCCCACATGGACATGGTGCCAGCTTCCACCATGGAGGGAACTGGGGAAAAGCCAGATTCCACTACCCCAGCACCCACCCCTGCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038622-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCCCTGGGGTTCTCTTT
R:
GGGTGCTGGGGTAGTGGAATC
Band lengths:
138-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]