RnoEX0101587 @ rn6
Exon Skipping
Gene
ENSRNOG00000014501 | Zfp638
Description
zinc finger protein 638 [Source:RGD Symbol;Acc:1309746]
Coordinates
chr4:115653166-115655356:+
Coord C1 exon
chr4:115653166-115653249
Coord A exon
chr4:115653861-115653929
Coord C2 exon
chr4:115655319-115655356
Length
69 bp
Sequences
Splice sites
3' ss Seq
AAGTAGTCTGTTTTATGCAGCAA
3' ss Score
2.05
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
CAAAATCTGGAAAGAAGTCTCTAGAAGCTAAAAAGTCTGGGAATATCAAAAACAAAGACTACAATAAACCCGTGACTGTATCAG
Seq A exon
CAAACTCTGAAGTCAAGGCTAGTAGAGAAGACAAAGCCACTGGAAAGACTGCTGTGGAAACTACTTCAG
Seq C2 exon
GTGCTTTGGAGGCCACAGAAAATGAACCAGTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014501-'21-21,'21-20,22-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=1.000 C2=0.846
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGGAAAGAAGTCTCTAGAAGCT
R:
CTTGCTCACTGGTTCATTTTCTGTG
Band lengths:
119-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]