RnoEX0101672 @ rn6
Exon Skipping
Gene
ENSRNOG00000016186 | Zfp709
Description
zinc finger protein 709 [Source:RGD Symbol;Acc:628698]
Coordinates
chr16:19637807-19643236:-
Coord C1 exon
chr16:19643213-19643236
Coord A exon
chr16:19638367-19638852
Coord C2 exon
chr16:19637807-19637933
Length
486 bp
Sequences
Splice sites
3' ss Seq
TATAATTCTTTCTCATGCAGAAG
3' ss Score
8.69
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATGGAGGCCCTGGGAGCAGACATG
Seq A exon
AAGTCACTTGAGGCAGCTGAACAAATCACATCTGAAGTCAGAAGAAGAATGTAGTGAATGCGGGCTATGTTCTGCCATTTTCTCCATTTCATACAACCCAGAGTCCCCTGCCCAGAGGATGGTCACCGACAATGAAAATGAATCATATCACATCAGTGAACATAATCAGAATAAATCCCTCCAGGTGTGCCAAGATGCCCATCCACCCAACACCGACCGTTACATATAAACATGATCTGGGATCCCAGGCTGAATGAAAAAGGAAAAAGGAAGAGTTCAAGTGGAAACCAGCATTCCCTGCTCTGTTTTCTGATCTTCGCCAATTTGGAGTCCCTACTGCACGATCCTACCCCCATGACTTCTGCCATGACCTCCCCCCAGTGATAGGCTCTACCCTTTCAAGACTTGATCCAAAGTAAACCTTACTTCTCGAGACTTGCTCTTTACTCACAGTGTTGAGGAAAGTCATTTATACAAAGTTGAAAG
Seq C2 exon
GGCTCTGTGACCTTTGAAGATGTGGCTGTAAACTTCACTGTGGAGGAATGGGCTTTACTGGGTCCCTCCCAAAAGAAGTTACACAGAGATGTGATGGAGGAGACCTTCAGGAACCTGGCTGCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016186_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=1.000 C2=0.070
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
ENSRNOT00000087597fB17002
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]