RnoEX0101695 @ rn6
Exon Skipping
Gene
ENSRNOG00000033639 | Zfp777
Description
zinc finger protein 777 [Source:RGD Symbol;Acc:1566056]
Coordinates
chr4:77688858-77700182:-
Coord C1 exon
chr4:77700069-77700182
Coord A exon
chr4:77699609-77699754
Coord C2 exon
chr4:77688858-77689109
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTTATGCTCTTAGCTC
3' ss Score
6.85
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
ACTATGCAATATCCAAACCAGACCTGATGTCACAGATGGAGCGTGGCGAGAGGCCAGCCATGCAGGAGCAAGAGGACTCTGAGGAGGGCGAGACGCCCACGGATCCCAGTGCTG
Seq A exon
CTCCTAGATTTCCCATACAAGGGCCATGTTCCTGCAGAAGAGAGAACAGGCATGGAGATTGACATGTCACAGTGGTTCAGTAAACACAGCTACAGCCAGTGTCCTCCTCACACAGTGGTTGGAGCAGTAGCCTGCATACATTCACT
Seq C2 exon
CACATGATGGCATCGTGATTAAGATCGAGGTGCAGACCAACGATGAGGGCTCAGAAGGTCTGGAGACACCAGAGCCGCTGATGGGACAAGTGGAGGAACACGGCTTTCAGGACTCAGAGCTGGGTGACCCCTGTGGAGAGCAGCCAGACCTGGACATGCAGGACCAAGAGAACGTGCTAGAGGAGTCCACTGAAGGCTCCAGTGAGTTCAGTGAGCTCAAGCAGATGCTGGTGCAGCAGAGAAACTGCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033639_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.872 A=1.000 C2=0.988
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000038517fB17012
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCAAGAGGACTCTGAGG
R:
TCAGTGGACTCCTCTAGCACG
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]