RnoEX0101702 @ rn6
Exon Skipping
Gene
ENSRNOG00000023920 | Zfp791
Description
zinc finger protein 791 [Source:MGI Symbol;Acc:MGI:3648473]
Coordinates
chr19:26237514-26243223:-
Coord C1 exon
chr19:26243135-26243223
Coord A exon
chr19:26239730-26239782
Coord C2 exon
chr19:26237514-26239333
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGTGTACCACACGCATGCAGGAG
3' ss Score
4.08
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTAATGGTTTTACGGGTTTACATTTTAGGGGGTGAATTGGAAGACGAGGATGTTACAAATCAGTACAGAATCCAAGAGGAAAATGTAAG
Seq A exon
GAGTTCCTAGGGACCAGAAGAGGCAATCAGATGCCCTGGAACTAGAATTACAG
Seq C2 exon
AAGTTATATGATACAAAGACTCTATGAAAGTAAAGAGGTTACTCAGCATAGAGAAAGCTTCAGCCAGATTCCAAACACTGGCGTGACCAAGATAACTGCTGGAGGAAAACCATATAATTGTAGTGTATGTGGAAAAGGCTTCATGCTTTGTTCTTCCCTCACTAGACATGTCAGATCTCACCCTGGGCATGAGCTTGACGGGTTTAAGTGTGGAGAGAAGAGATATAAATGTAAGGAATGTGGGGCCACCTTCAGTTACCTCAAATCCTTTCAGAGACATGAAAGGACTCACGCTGGAGAAAACCCCTACAGGTGTAAGCACTGTGGGAAGACCTTCATCTATTACCAGCCCTTTCAAACACATGAACGGACACACATTGGAGAGAGAATCTATCAGTGCAAGCATTGTGGTAAAGTGCTCAGCTCTCCTGGTTCTCTTAGAATTCATGAAAGAATTCACACTGGGGAGAGGCCCTACGTGTGTGAGAAGTGTGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023920_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion (Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=7.4),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.3),PF046067=Ogr_Delta=WD(100=9.6),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
ENSRNOT00000037766fB17016
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGGTGAATTGGAAGACGA
R:
TGTTTGGAATCTGGCTGAAGCT
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]