RnoEX0101710 @ rn6
Exon Skipping
Gene
ENSRNOG00000047379 | Zfp82
Description
zinc finger protein 82 [Source:RGD Symbol;Acc:6499485]
Coordinates
chr19:14479486-14485351:+
Coord C1 exon
chr19:14479486-14479504
Coord A exon
chr19:14480320-14480460
Coord C2 exon
chr19:14485261-14485351
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTGTGTACACATACCGCCAGAAG
3' ss Score
3.31
5' ss Seq
CAGGTTTTT
5' ss Score
2.93
Exon sequences
Seq C1 exon
CGCCCGTCTGTTCCAAGAG
Seq A exon
AAGCCAGGAAAAGGCATCTACTTCCCAGGAACTGGAGCTACAGAAGGTTGTGAAGCACCATGTGGGTTCTGGGAATCAAACTTGCACCCTCTGGAAGAACAGCCACTGTTTCTAATGGCTGAGCTATCTCCAGCCTCACAG
Seq C2 exon
CTTTGCTTGTCTGAAACCCAGTTTTCTGTAAAGAAATACTGAAGAAGAGCCAACCGGTTCCTGCAGCTCTCACACTATGGCACGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047379_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCGTCTGTTCCAAGAG
R:
CTGAGCGCGTGCCATAGTG
Band lengths:
110-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]