RnoEX0101746 @ rn6

Exon Skipping

Gene

ENSRNOG00000030416 | Zfp870

Description

zinc finger protein 870 [Source:RGD Symbol;Acc:1597136]

Coordinates

chr7:15159422-15163866:-

Coord C1 exon

chr7:15163740-15163866

Coord A exon

chr7:15163490-15163550

Coord C2 exon

chr7:15159422-15160901

Length

61 bp

Sequences

Splice sites

3' ss Seq

TTTCTGTGTCTGCATTTTAGGAA

3' ss Score

11.64

5' ss Seq

GAGGTAATT

5' ss Score

8.88

Exon sequences

Seq C1 exon

GAGTCAGTGAGCTTTGAGGATGTGGCTGTCAAGTTCACGCAGGAGGAGTGGGCTGTGCTGGATCCATCCCAGAAGAAGCTGTACAAAGATGTGATGCAGGAAACCCTGAGGAACCTGGCCTCTATAG

Seq A exon

GAAACAAGTTGAGCAAACAGAAGGTTGTGAGTGAGTATGAGAAACTATGGAGAAAACTGAG

Seq C2 exon

CAGCCAACTGGTGGAGAAGTTCTGTGACTATCATGAAAGTCGTCAGTGTGCAGAAATCTTCAGCTTCAATCCAGGGCACTCCTGTCCAGGACTTGCTACCTTTGTAAAGAATGCCTGTGAAGAGGGTAGAATTGGCCATTCATCTCTGGGTGTGCCACTGAACCATCAGGTAGGACCTTATGAAGACCAGGAATATGGACAGGCACTGTATGAACGTAAGGAGTTGGGGAGCAGCTCCAGTTCTCTGTCCCTTCAGATGCACAAAAGCACTCCCACCGGAGAAAAACCTTCCAACAATAAAAACTTTGAAGAAGACCTTCCTTGTGTCAAATCCAGCCAAATGTATGAACAAAATGGTTGCGCAAAGAAGTCTTATATGCACAAGGCATGTGGGAAAGGTTTCGCGCATCCCAGTCCTTTACAAAGGCATGAGAAGGTTCACAGCGTTAAGAAGCCCTATGTGTGTGAACTGTGTGGGAAAGGCTTTGCTCGGTTGGGTA

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000030416-'0-2,'0-1,1-2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.146

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF0128613=XPA_N=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF054957=zf-CHY=WD(100=14.6),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)

Main Inclusion Isoform:

ENSRNOP00000045589