RnoEX0101757 @ rn6

Exon Skipping

Gene

ENSRNOG00000020087 | Zfp90

Description

zinc finger protein 90 [Source:RGD Symbol;Acc:1563077]

Coordinates

chr19:38601968-38608779:+

Coord C1 exon

chr19:38601968-38602063

Coord A exon

chr19:38603494-38603527

Coord C2 exon

chr19:38607134-38608779

Length

34 bp

Sequences

Splice sites

3' ss Seq

TTTGGTTCTTTTTTTCGGAGCTG

3' ss Score

-2.31

5' ss Seq

TAGGTAAGC

5' ss Score

8.89

Exon sequences

Seq C1 exon

GGTATCAAGTCTCCAAGCCAGAGGTGATCTTCAAACTGGAGCAAGGAGAAGAGCCATGGATATCAGAGAGAGAACTCCAAAGGCCTTTCTGTCCAG

Seq A exon

CTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAG

Seq C2 exon

ACTGGAAGACCAGGCCTGACATCAAATCGTGGAGTTCCCAGCAGGGCGTATCTGAAGTATCCCACAGTGCAAATGTTTGGTCGCACGCCACATTCGGAGATATCTGGGGTGTCAATACCCAGAGGCACCAGGAGAGTTGGAGAAGACATCTTGGGCCAGAGGCATCTTCCCAGAAGAAAATAACCGCTCTGGAGAAAATAGCTGAGCAAAATAAGTTTGGTGAGGACTCAGGTTTGAGCACAGACTTGGTTCCACAATTGGACGTTTCTTCAAGCATAAGGCCCAGCGAATGTAAGACATTTGGAAATAATTTGGAATACAATTCTGAATTAGTTACTCAGAGTGGTATCCCTGCTAAAAAGAAGCCTTACAAGTGTGATAAATGTAGGAAGTCATTTATTCATAGATCATCACTCAATAAACATGAGAAAATTCATAAAGACGATGCTTATTCCAATGGTACGGATCAAGGAGTTCCTTCTGGAAGGAAACATCATGAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000020087_MULTIEX1-4/4=3-C2

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

In the CDS, with uncertain impact

No structure available

Features

Disorder rate (Iupred):

C1=0.121 A=0.750 C2=0.232

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NO

C2:

PF0009621=zf-C2H2=WD(100=4.2),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.0),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7),PF134651=zf-H2C2_2=WD(100=4.7)

Main Inclusion Isoform:

ENSRNOT00000027209fB17021

Main Skipping Isoform:

ENSRNOP00000027209

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

ENSRNOP00000075443

Associated events

Conservation

Human

(hg38)

NA:-

Human

(hg19)

No conservation detected

Mouse

(mm10)

NA:-

Mouse

(mm9)

No conservation detected

Cow

(bosTau6)

No conservation detected

Chicken

(galGal4)

No conservation detected

Chicken

(galGal3)

No conservation detected

Zebrafish

(danRer10)

No conservation detected

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

AAGTCTCCAAGCCAGAGGTGA

R:

CGATTTGATGTCAGGCCTGGT

Band lengths:

119-153

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Special

RnoEX0101757 @ rn6

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]