RnoEX0101909 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231881091-231884424:+
Coord C1 exon
chr2:231881091-231882243
Coord A exon
chr2:231882514-231882786
Coord C2 exon
chr2:231884335-231884424
Length
273 bp
Sequences
Splice sites
3' ss Seq
TAAAGCTATGTTTCTTTTAGGTA
3' ss Score
8.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CACAGAGTACGTAGCCGAACCAACGGAACAGTGGCGAGGGGGGCGGGGTGAACCCGACCACAGATGTAGGATGGACCTCAGGATACCAGACTGAGAGGAGCTTCCACCTCACCCGGTCTGAGAGGATCTACAGGCCACTTGTGACTTACTCCGTGCACGTCCTCAGATCCACGGTCAGCGATTGCGTTCTTCCACGCTTTCCGTCTCCCGACCCTAGCAGGCGGCGGAAATTTGCGTCATCCGACCAGCGACGCGCTTCTCTCAGCCCACTACAGAAGGCCGGGTCCGAGGCTCTGTGTCCGTCACTGACGTCACAGGCGACGCATCTCGGGGGCGGGACCTGGGGGGGTGTGGGAAGCGCGTTGACTGCGCTCGGATGCGGAATTCCATTGGTAGTTTGCGAACGGTGGCGGTGGGGCCTCAGCCGCAACGTCCCTGCTTGATGACGTCTCTCAAGTTCGCGGGAGAAATTCGAAAGTGGAGTTCATGTCATCGAGCAG
Seq A exon
GTAGTTGTACTGTTATTTGTGGTTTGGAAATTTTACTGGTTTGGGCCGTGCTGTTCTGAGCTACTGTGTCAGCTTTTCTTTAAAAGCAAGGTTATGCCACGGCTTCCTGCTGTTTTCATGGAAAGCTCTCCTCAGCATAACAGAAGATCATATACATCCGATTACTGATGACTCCTGCCTCATCCTCATTCTCTAGTGCTTTCCCTTTTCTATGCTGCTTAAGGATCAGGCCTCTGCGCATACTGTTTCCGGGTTGGGAGCCACCCTTCACTG
Seq C2 exon
AAGCTATAAATGTTGAATAAAAACTGATTATTTTCTGGACCTGACTATTTTATAATCTCAGAAGAAACAATGGAATGTCAAGAATTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980_MULTIEX1-1/2=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF103824=DUF2439=PU(5.0=57.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCTCTCAGCCCACTACA
R:
AGTCAGGTCCAGAAAATAATCAGT
Band lengths:
293-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]