RnoEX0102051 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144942183-144969360:-
Coord C1 exon
chr5:144969315-144969360
Coord A exon
chr5:144946644-144946805
Coord C2 exon
chr5:144942183-144942704
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCATTTTTCAATAGGAC
3' ss Score
11.08
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TTTGAACAGAAAAGTGATGCAGTTTTTGATGAAATTGTAGAAAACT
Seq A exon
GACTTGGGAATTTGAAAAAAAACAAAACATGTCACTCCCCACCCTCAACCCCCTTGAAAAGGTTCATTCAGCTGGATGGTGGTGGCACATTCTTCTAAATGCCAGTACTTGGAATGCAGAGGCAGTCGGATATCTGAGTTCAAGGCCAACCTGGTCTAAAAA
Seq C2 exon
GTGGTGTCATGGATACAGAAATGTCTGAAGACACAGACCACAACTTAACTCCCACCCTTGCCAGCATGTCTTATGGAATGCCGAGTCAAACAGGATCTGAAAATTCATTGCTGGATGAAGATGATTATTTTTTGAACTCTGGGGATCTTGCAGGAATTCCAGTCGTTAGTAGTGACAATGAGGATGAACAGGATTTTAGTTCAAAGGACAATCTTGTTTCTTCAGCTCATACTGATGGTAGTTTGGAGATAGAGAGAAGAGCTTCTCATCATGAATCAGACAATGAAAATGAAATACAAATTCAAAGTCAATTAAAAAAAGACTTTCCTAAACAGTTTGATCAGGTTTCTGTCTTTAAATCAATACGAAAAGATTTTTGTTTAGTGAGAGAAAACAGCAAAGAGACATTTTCTGGAAAGGAGAAAAATAGAGACCTAACTTATCATGAACGCGAAAAACGATTGGATAAACCCCATAAAGGTTTGGATTCAAGGTTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397_MULTIEX1-3/8=1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.688
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAACAGAAAAGTGATGCAGT
R:
AAATCCTGTTCATCCTCATTGTCACT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]