RnoEX0102072 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145166783-145168844:+
Coord C1 exon
chr5:145166783-145166930
Coord A exon
chr5:145167833-145168042
Coord C2 exon
chr5:145168677-145168844
Length
210 bp
Sequences
Splice sites
3' ss Seq
AATTTCTTTTTTACAAGTAGGAC
3' ss Score
5.08
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
ACAGCCAGGTGTGATGCCTGTAAACGGCAGGGTAAGCTAAGCGAATCCTTGAAGTGGAGAGGCAACATCAAATACTTCTGTAACCTGTTTTGTGTCTTGAAGTTTTGCCATCAGTATAGTGCGAATGACCCAATTCCACAAAGAAAAG
Seq A exon
GACAACTAATGTGGTCAAGAAAAATCGAGATGAGTGATGTGTGGAATGTTCTTAAAGTGTGTCCTCTCAGGAGTACTGTCCGATGATCCAAGACAAGCATAGATCCTCTGCTGAGAACCTCGAGTACTACATAATTCTTACAGTGTGCTCTCCCTTATGTATAGCTGTTCTAAGCTTCTGTGTTCGCCAGCCCATCCTAGGACTAGTCAG
Seq C2 exon
TGTTTGTGCTCCCAAAGCCAGCACAGGTAATTATTCCTAAGGTACAAACTGCTATGACGGCACTCCCTTCTCCAAAGATAGCTACAACACCGGTTATAACCAGTGTGACATCATTGGCAAAAATACCTGCACTCCAGCCCTCCAGGAACACTAACAGTGTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865-'22-22,'22-21,23-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(85.0=68.0)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000019135fB17076
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGCCTGTAAACGGCAG
R:
TGTTAGTGTTCCTGGAGGGCT
Band lengths:
295-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]