RnoEX0102079 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145154315-145160544:+
Coord C1 exon
chr5:145154315-145154486
Coord A exon
chr5:145157478-145157684
Coord C2 exon
chr5:145160394-145160544
Length
207 bp
Sequences
Splice sites
3' ss Seq
TGTTGTCTGGAAATTGACAGTTC
3' ss Score
2.88
5' ss Seq
ATGGTTAGA
5' ss Score
3.54
Exon sequences
Seq C1 exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAATTTGAAAATTCCTCTCTCTGCAAAGAGTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCTGCTAAGTGCAGTATGTGTCAGAAGGGCACTGAT
Seq A exon
TTCACAGGTCAGCAGCAACAACTGGATCCGCCCACAAATGCGTCACAGATGCACCAGCAGTCCAGTTCAGTAGAGTCGGATAACAACCACGAACCAGCAGCGGACACCTAGCCTCAGCACAAGCCAGTTAGGAGGGCGTCGACCAACAGGAGTGCCAGGAAATTTTCTCAGCTGTCTCTCTCTGCAATGCAAAGATCAGTCAAGATG
Seq C2 exon
AATCTGGCCCCGAAGCCACTCTATGCCTTGGGGAATTCATCGAGGCTGTCTGCTGAAATGATCGAGACTACCAATGACTCAGGAAGAACAGAGCTTTTCTGCTCTATTAACTGCTTATCTGCTTACAGAATTAAGACTGTTATTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865_MULTIEX1-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.889 C2=0.020
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(70.5=53.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000019135fB17078
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACATTTTAAATCCGATGGATGTGA
R:
AGCAGATAAGCAGTTAATAGAGCAGA
Band lengths:
295-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]