RnoEX0102293 @ rn6
Exon Skipping
Gene
ENSRNOG00000005886 | Zscan20
Description
zinc finger and SCAN domain containing 20 [Source:RGD Symbol;Acc:1562996]
Coordinates
chr5:146769291-146781752:-
Coord C1 exon
chr5:146781260-146781752
Coord A exon
chr5:146775685-146776191
Coord C2 exon
chr5:146769291-146769462
Length
507 bp
Sequences
Splice sites
3' ss Seq
AGCTGGGATTTTTGTTTTAGAAA
3' ss Score
6.3
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TCTTGGGGAGCAGTCCCTCCCAAGAAGTACACATCGTCAATGCAGGAAGCCACCGGATGAGGACGACCCTGCTAAAGTGGAGCATCCAGGCCAGATGATGGCTGTGGCCTCGCCCCCGCCCGAGCCGGAAGACCTCCTTATCGTGAAGCTGGAGGAGGACTCGTGGGGATCACGCTCCAGGCCTGAGGAGAGCAGCCATAGCTCTGTCCCTGGCCCCGAAGTTTCCCGCCTGTGTTTCAGGCAGTTCCAGTACCAGGATGCGGCTGGACCCCATGAGGCCTTCAGCCAGCTCTGGGCTCTCTGCTGTCGTTGGCTGAGACCTGAGCTTCGCCTGAAAGAACAGATTCTGGAGCTGTTGGTGCTGGAGCAGTTCCTATCTATCTTACCCAGGGAGGTGCAGACCTGGGTGCAGGCACGACACCCCGAGAGCGGAGAGGAGGCGGTGGCCCTGGTGGAGGATTGGCACCGAGAGGCCTGGGCTGCTGGACAGCAG
Seq A exon
AAACAAGACTGGACCTGCTGTGGGCTTTCCTTCTCCAACGAGGCTACACCTCCTCCTCCTTCCTGAAGTCTACCAGCTGTGAACCAGACATGAAAATACACGAGCCTAAGGGGCTATTCTCATTTGAAACACCACAACAGCATCAAATGTCAGCACATGGCGCCGGTCAAACTGGAGAGTTTGCATGTAGAATGAGCTAGATCCCTGTCTTTCACTCTACACGAGACTCAAGTCCACATGACTCACGGACCTCAGTGTAAGACCTGATAACCTGAGTCTGATAGAGGAGAAGGTGGGTGGGTGGGTTAGGGATGTGCTTTAACCCATGGGCTCAGGAAAGGACGTTCCTAGCTAGACTGCTGCATCATAGGCATTAAGACTAACATTTGACAAGTGGGACCTCATTAAACTAAAAAGCTTCTGCACAGCAAAGGACATCATCATCTGAGTGAAGAAACAGCCCGTAGAATGGGGAAAAGGACTTGCCAGTTATACATCTGATAGAGG
Seq C2 exon
GGTCTGGAGCTGTGCACTGAAGACACCAGGTCCTTTGAAGCAGTTCAGGAGTTCCAGAGGTTCCAGCTGCAGCCAGTGGCCCACTGCTCTGAGAGACAGCCCCAGAAACAGAGGGTGGAGAAGACACATCCTGGCCTTTCCAAGATGCCACCTGAGTCCTTGAAAGAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005886_MULTIEX1-2/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.238 C2=0.466
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.7)
A:
PF0202312=SCAN=PD(0.1=0.0)
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
ENSRNOT00000008887fB17132
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGAGACCTGAGCTTC
R:
TCAAGGACTCAGGTGGCATCT
Band lengths:
348-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]