RnoEX6001765 @ rn6
Exon Skipping
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82598792-82603194:-
Coord C1 exon
chr1:82603015-82603194
Coord A exon
chr1:82601617-82601758
Coord C2 exon
chr1:82598792-82598979
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACACTTATTTCAATACTCAGGAG
3' ss Score
5
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCTTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAGGTACAGAGACACCAGGGACGCTCCCACACCTCAGGTCCTGCTCGTGACGTCGTCGATGCCTTCCTGCAAAAGATGGCGCAG
Seq A exon
GAGAAAGAAGACCCAGGTACAGAATTCACCGAGAAGAACTTGCTGATGACAGTCACATACCTGCTGTTTGCTGGGACTATGACCATCGGAGCCACCATCCGCTATGCCCTTCTGCTCCTACTGAAGTACCCTCAAGTCCAAA
Seq C2 exon
AGCGTGTTCGGGAGGAGCTGATCCAGGAGCTGGGTCCCAGCAGGACTCCAAGTCTCAGCGATCGAGTTCGCCTCCCTTACACGGATGCTGTTTTACACGAGGCACAGCGGCTCCTGGCCCTGGTACCCATGGGAATGCCCCACACCGTCACGAAGACCACTTCCTTCAGAGGATATACTCTGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.125 C2=0.127
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.8=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
PF0006717=p450=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCAGGTACAGAGACACC
R:
GAAGTGGTCTTCGTGACGGTG
Band lengths:
252-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]