RnoEX6001780 @ rn6
Exon Skipping
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83631892-83634615:+
Coord C1 exon
chr1:83631892-83632052
Coord A exon
chr1:83632425-83632601
Coord C2 exon
chr1:83634474-83634615
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCCTCTGCCCTGCAGTTA
3' ss Score
8.46
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GAGCTCCCATAGATCCCACCTTCTACCTGAGTCGCACTGTGTCCAATGTCATCTGTTCCGTCGTCTTTGGAAAACGTTTCGACTATGAGGACCAGCGTTTCCGGAGCCTCATGAAGATGATCAATGAGAGCTTTGTGGAGATGAGCATGCCCTGGGCACAG
Seq A exon
TTATATGATATGTACTGGGGAGTCATACAGTATTTTCCAGGAAGACACAACCGCCTCTACAACTTGATAGAAGAGCTTAAGGACTTCATTGCTTCCAGGGTCAAGATCAATGAAGCATCCTTTGACCCCTCAAATCCTAGGGACTTCATCGACTGCTTTCTTATTAAGATGTACCAG
Seq C2 exon
GATAAAAGTGACCCACACTCAGAATTCAACCTCAAGAACTTGGTTCTCACCACCCTCAACCTCTTCTTTGCTGGCACGGAAACTGTGAGTTCCACACTACGATATGGATTCTTGTTGCTAATGAAGTACCCCGAGGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827-'5-10,'5-8,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCTTCTACCTGAGTCG
R:
TGGAACTCACAGTTTCCGTGC
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]