RnoEX6005455 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212705385-212706790:+
Coord C1 exon
chr1:212705385-212705408
Coord A exon
chr1:212706054-212706191
Coord C2 exon
chr1:212706601-212706790
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTTCTGCCCCACAGCTC
3' ss Score
9.8
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGTCTCCACAACCACTGCATTGT
Seq A exon
CTCCTTCCCTGACGCCTCCACCCGTTGCTGAGGCCTGGAACCTGCCTGAGGTTGCCTGCTTGGTGCTTGGCTGCCTCCTGGGCATTGTCTTCCTGGCTATGATTGCCCAGTGGTGTCACATCAGAGATGCTAGCATGG
Seq C2 exon
GTTCTGGCATGTTGGGGAATCTACAGTCAGATGGTGTCTATGAGGACATTGAAGTTGTCCCTGTGATGAAGAAAGAGGAGAACGCAATATCCAGGCTGCTGATGCTGGAAGACGGTTATGATGATGCTGAAGAGCCCGAGGGTCAGCCTACAGAGAGTGAGGAGGAGTGCAATGGGCACTGCTGAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.064 C2=0.393
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCCACAACCACTGCAT
R:
AAGCTCAGCAGTGCCCATTG
Band lengths:
213-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]