RnoEX6005456 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212704844-212706191:+
Coord C1 exon
chr1:212704844-212705158
Coord A exon
chr1:212705385-212705408
Coord C2 exon
chr1:212706054-212706191
Length
24 bp
Sequences
Splice sites
3' ss Seq
ATCTCATATTTCTGTTGCAGGTG
3' ss Score
11.41
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
AGGACAGCGTATTGCGTGTGCTCGGAGGCGAGGATGGCTGTTCCGGGCGTGTGGAGCTCTGGCACGCAGGCTCGTGGGGCACAGTGTGTGATGACTCCTGGGACCTGCTGGATGCCCAGGTTGTGTGCCGGCAGCTGGGCTGTGGCCAGGCCTTAGCTGCTTTGGAAGGTGCCGCCTTTGGCCCTGGTATGGGGCCTGTGTGGTTGGATGAGGTGGAGTGCCTTGGCAGCGAGGTGACCTTGGAGGCCTGCCAGGCTGAGCTCTGGGGACACGGAGACTGCACGCACAAGGAGGATGCAGGTGTTCGTTGTGCAG
Seq A exon
GTGTCTCCACAACCACTGCATTGT
Seq C2 exon
CTCCTTCCCTGACGCCTCCACCCGTTGCTGAGGCCTGGAACCTGCCTGAGGTTGCCTGCTTGGTGCTTGGCTGCCTCCTGGGCATTGTCTTCCTGGCTATGATTGCCCAGTGGTGTCACATCAGAGATGCTAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'11-12,'11-11,12-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.064
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGCAGGTGTTCGTTGTG
R:
AGGAAGACAATGCCCAGGAGG
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]