RnoEX6005464 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212695735-212699305:+
Coord C1 exon
chr1:212695735-212696096
Coord A exon
chr1:212697591-212697923
Coord C2 exon
chr1:212699012-212699305
Length
333 bp
Sequences
Splice sites
3' ss Seq
GGTTGGTCCTGTTCTCACAGGCA
3' ss Score
6.95
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CACTCTGCTAAAGTCAGACGGGCCACCTGTCTGGTGACAGGGCCTGGGTGAGGCTCTCCTTCAGTGGTTATCAGTATGGGAGGAAACCACCCCATCCCCTTGCTCATGTCTGGTGGTGCTTGGGATCAGCAAGGTCATTGGCTGTTCTGCTACAGACGGAGATGTAGACCTGCTGGTGTGCTAGGGCTCTTGCTGTACCCGTCGGACATGGGCTAACGGTTCTCTTACACCTATAAAACTGGCTCTGGGACAAGATCTCCTTTTTTGCTACAGCTGAAGCTCTGGACTCTGTGCAGCCATGAGGACAACACTCTGGACTCTGAGTTTGGGGTCTCTTCTTACTCTCAGGGCAGCTCTCATTG
Seq A exon
GCACATCTTCTGAAGATGGCCAAGGCAATCTGAGGCTGGCACACAGGCAGAGCAAGTGCGACGGAGTGGTGCTGGTTCGACACCAAGGGGAATGGGGCCATCTGTGCAACCTGGAGTGGACACTGGCAGAAGCCTCTGTGGTGTGTAGACAGCTGGGCTGTGGCCCTGCCGTTGGCGCTCCCAAATACGTGCCCCTGCCTGGAGAGATGGTCCAGCCCTGGCTGCACAATGTATCCTGTTGGGGCAATGAGTCCTCTCTCTGGGAGTGTAGCCTTGGGGCATGGAGTCAGCGTGCTTGCCCCCATGAGTGGGTGGTGGTGGCTCTCTGTGCAA
Seq C2 exon
ATGGCACCTTCCGGGAGATCCGGCTAGTGAAGGGCCACAGTCCCTGTGCAGGACTCCCCGAGATCAGGAATGTGAATGGGGTGGACCGCCTCTGTGGCCTGCATGTGGAAGAGGCCACGGTGTTCTGCCGTGAGCTGGAGTGTGGCCATGCACTCCAGGCCCCCCGTCAAGACGTGGGTGTCAGTAAGTACATGACCTGCAAGGGCACTGAGCCCACCATCCGTAACTGCAGACTTAACAACAAGCTACGTGGAGGCTGCAACCTGCTGCTGGATGCAGAAGTGGTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'0-2,'0-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053013=SRCR=WD(100=87.5)
C2:
PF0053013=SRCR=WD(100=89.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGGGACAAGATCTCCT
R:
GTCTGCAGTTACGGATGGTGG
Band lengths:
356-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]