RnoEX6005466 @ rn6
Exon Skipping
Gene
ENSRNOG00000036647 | Olr292
Description
olfactory receptor 292 [Source:RGD Symbol;Acc:1333185]
Coordinates
chr1:212715582-212806089:+
Coord C1 exon
chr1:212715582-212715890
Coord A exon
chr1:212804564-212804878
Coord C2 exon
chr1:212805784-212806089
Length
315 bp
Sequences
Splice sites
3' ss Seq
CACCCAGTGTCTGTCCTCAGGTC
3' ss Score
9.73
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTGGTACCACACGACAAATGGGGCTGGTTGATGGCAGCAGTCCTTGTGCTGGGATTGCACAGGCCACTGGGATTTCCAATTTCTCCCTGAGATGTGACTTGCATGAGAAGGAGGCTGGCGTTGTGTGCAGACAGCTGGAATGTGGCACTGCTCTGCAATGGTCCAGAGCCCACCATGGAACCAATGGGTATCATGAACGGAAGTACCTTACGTGCCAGGGAACAGAGTCTGACATTTTACATTGCCTGATTGATGTGAACTTCCTAGAGCAATGTGACCTTCTGACCTACACCCAGATTGTATGCACAG
Seq A exon
GTCACGTGGAGGCCCGGCTGCTAGGTGGTACACACCCCTGTGAAGGACGCCTGGAGGTTCTTCGAGGACTTACCTGGGGCACAGTTTGCCATGATGACCTGGATATGCCCATGGCCCACGTGGTTTGTCGGGAGCTGGGGTGTGGCACTGCTGTATCCATACTCGGGAGTTCCCCCTTTGGCTATGGATCAGGGCCTGTGTGGACAGAGGCCTTTCACTGTGCGGGCAATGAATCACTGCTGTTCCATTGTCTGAGGGAGCCTGGACACCAGTGTGGCCATGATCAGGTTGCTGCACTAACCTGCTCAGGAGAAA
Seq C2 exon
AGTTCCGACTGGTGAATGGCAGCAGCCGCTGTGAGGGCCGTGTGGAGCTTTTGGTACAGAATGCCTGGCAACCCCTCTGTGCTGCTGACTGGGACTTAGCAGATGCCACAGTGCTCTGCCACCAGCTCAATTGTGGCTATGCAGTTGCCACGCCCCAAGGAGGTCACTTTGGAAATGTAGAGGCTTCCATCAGGACAGATGTATTTCACTGCGTGGGGACAGAGCCCCACTTACTGAGCTGCCCAACAAGCACCTTAGGGGCCCAGGCATGCACCCTGGGGAATTCAGCCTCAGTTCTCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036647-'2-11,'2-10,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.4)
A:
PF0053013=SRCR=WD(100=90.6)
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCATGAGAAGGAGGCTGG
R:
ACAATTGAGCTGGTGGCAGAG
Band lengths:
346-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]