RnoEX6009077 @ rn6
Exon Skipping
Gene
ENSRNOG00000048363 | Dnah5
Description
dynein, axonemal, heavy chain 5 [Source:RGD Symbol;Acc:1560828]
Coordinates
chr2:81107917-81110360:+
Coord C1 exon
chr2:81107917-81108039
Coord A exon
chr2:81108483-81108696
Coord C2 exon
chr2:81110137-81110360
Length
214 bp
Sequences
Splice sites
3' ss Seq
GTAAACACTGTTTCTCTTAGGTT
3' ss Score
6.63
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
Exon sequences
Seq C1 exon
AGGACAATAGAGAGTTATGTGGATAAACGCATGGGCACAACATATGGTCCTCCTGCGGGGAAGAAAATGGCTGTCTTTATTGATGATTTAAATATGCCAGTAATCAACGAATGGGGTGATCAG
Seq A exon
GTTACTAATGAGATTGTCCGACAGCTGATGGAACAGAATGGATTCTATAACCTAGAGAAGCCTGGAGAGTTCACTAGCATTGTGGACATCCAGTTCTTGGCAGCCATGATCCATCCTGGGGGTGGACGCAATGACATACCACAGAGGTTGAAGAGACAGTTCTCCATATTCAACTGTACCTTGCCTTCTGATGCTTCCATGGACAAGATCTTTG
Seq C2 exon
GTGTGATTGGGGAAGGCTACTACTGTGCCCAGCGGGGCTTCTCAAAGGAAGTGCAAGATGCTGTGATAAAGCTTGTACCCCTGACACGCCGCCTGTGGCAGATGACCAAACTGAAGATGCTCCCAACGCCTGCAAAATTCCACTATGTGTTTAACCTTCGAGACCTTTCCAGGATCTGGCAGGGCATGCTGAATATCACTTCAGAGGTCATCAAAGACACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048363-'54-55,'54-54,55-55=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(14.7=100)
A:
PF127752=AAA_7=FE(26.0=100)
C2:
PF127752=AAA_7=FE(27.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAACGCATGGGCACAA
R:
CATGCCCTGCCAGATCCTG
Band lengths:
292-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]