RnoEX6012363 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10459919-10467779:-
Coord C1 exon
chr4:10467702-10467779
Coord A exon
chr4:10460242-10460334
Coord C2 exon
chr4:10459919-10460133
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCAACTTCTCTTTCCTATAGGCT
3' ss Score
10.38
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGTTTGTGTGTGTGTTACAGCCCGAAGTCTGACTCTTGGAAAGAAATCACGTATTCAGTGTTTTACCTCCATAAAG
Seq A exon
GCTACTTTGTGGCTGTTTATTCCCCCTGCCGTTTCCTTCATTTACTTAACATTCGGCATCCAGACTTGATCTGCCACAGTCTGTTTCTCACAG
Seq C2 exon
GAAACAACAAAACGGCCGCTGTGCTACCTCCGAGTCCTTTGCAGTCCCTGCCGGGGTCCCTCATTCTGGACTGCTCTTCTGGAAAGGTCTATAGAGCAACTCTTGACCAGTCATACTTGATGGGTTTCCTGTGGAACGCCCAGCTAGACTGTGAGAAAATGGCTGCGCTGCATTGTGCACTGTCCTGTGATTCAGACCCAGGTTTCCCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'14-25,'14-24,18-25=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000083964fB6265
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCGAAGTCTGACTCTT
R:
TGACTGGTCAAGAGTTGCTCT
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]