RnoEX6014792 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150597872-150604247:-
Coord C1 exon
chr4:150604214-150604247
Coord A exon
chr4:150600189-150600261
Coord C2 exon
chr4:150597872-150597932
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTGTTGGCTGTTGTTCTAAGGTC
3' ss Score
7.67
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGGATAATGTTTCTGAAGATGGCTCTTTAACCAG
Seq A exon
GTCTTCTCACATACCTGATCCTGCCGACTCCTGGCCTACATCAGATGAGGATGACTATAACTTTGATACCAAG
Seq C2 exon
AACGTTCCCAAAATTAATTTAACAGAGTTGTGGACAGCTGCCCAGCAGTCTAAGAAAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAATGTTTCTGAAGATGGCTCT
R:
GGTTTTTCTTAGACTGCTGGGC
Band lengths:
95-168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]