RnoEX6016053 @ rn6
Exon Skipping
Gene
ENSRNOG00000005780 | Adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:RGD Symbol;Acc:1311594]
Coordinates
chr3:5541790-5543124:+
Coord C1 exon
chr3:5541790-5541938
Coord A exon
chr3:5542292-5542412
Coord C2 exon
chr3:5543044-5543124
Length
121 bp
Sequences
Splice sites
3' ss Seq
CAACATCCCTCTTTGCACAGACC
3' ss Score
6.72
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGGATACTCTGTGCAGACACATGTGCTGGGCTGTTGGAGAAAGTTTCATTGTCAGCCGTGGGGACAGTTTCCTCGATGGGACCCGTTGTGTGCCAAATGGTCCTCGGGAGGATGGGACCGTGAGCCTCTGTTTGTTGGGTAGCTGCAGG
Seq A exon
ACCTTTGGCTGTGATGGCAAGATGGACTCCCAGCAGGTTTGGGATGCGTGCCAGGTGTGTGGAGGAGACAACAGCACCTGCACTTCCCAAAATGGCTCTTTCACAGCTGGGAGAGCCAGAG
Seq C2 exon
AGTATGTCACGTTCCTGATAGTCACTCCCAACATGACCAGCGCACACGTCATCAACCACAGGCCTCTCTTCACACACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005780-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACACATGTGCTGGG
R:
CCAAGTGTGTGAAGAGAGGCC
Band lengths:
220-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]