RnoEX6016111 @ rn6
Exon Skipping
Gene
ENSRNOG00000009446 | Rxra
Description
retinoid X receptor alpha [Source:RGD Symbol;Acc:3610]
Coordinates
chr3:6276487-6284456:+
Coord C1 exon
chr3:6276487-6276637
Coord A exon
chr3:6277183-6277362
Coord C2 exon
chr3:6284287-6284456
Length
180 bp
Sequences
Splice sites
3' ss Seq
CCTCTACCCCAACCCTGCAGGCA
3' ss Score
7.33
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
CTCAACTCACCCATGAACCCCGTGAGCAGCAGTGAGGATATCAAACCCCCTCTAGGCCTCAATGGCGTCCTCAAGGTTCCTGCCCACCCCTCAGGAAATATGTCATCCTTCACCAAGCACATCTGCGCTATCTGTGGGGACCGCTCCTCAG
Seq A exon
GCAAACACTATGGGGTCTACAGCTGTGAGGGCTGCAAGGGCTTCTTCAAGAGGACAGTACGCAAAGACCTGACCTACACCTGCCGTGACAACAAGGACTGCCTGATCGACAAGAGACAGCGGAACCGGTGTCAGTACTGCCGATACCAGAAGTGCCTGGCCATGGGCATGAAGCGGGAAG
Seq C2 exon
CCGTGCAGGAGGAGCGGCAGCGAGGCAAGGACCGGAACGAGAATGAGGTGGAGTCCACCAGCAGTGCCAACGAGGACATGCCTGTAGAGAAGATTCTGGAAGCTGAGCTCGCTGTTGAGCCCAAGACTGAGACATACGTGGAGGCAAACATGGGGCTGAACCCCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009446-'26-4,'26-3,27-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=0.000 C2=0.579
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PD(28.4=64.7),PF0010513=zf-C4=PU(15.7=21.6)
A:
PF0010513=zf-C4=PD(82.9=95.1)
C2:
PF0010425=Hormone_recep=PU(4.7=15.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAACCCCCTCTAGGCCTC
R:
TGCCTCCACGTATGTCTCAGT
Band lengths:
258-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]