RnoEX6016657 @ rn6
Exon Skipping
Gene
ENSRNOG00000025498 | Crb2
Description
crumbs 2, cell polarity complex component [Source:RGD Symbol;Acc:1309368]
Coordinates
chr3:22049148-22050172:+
Coord C1 exon
chr3:22049148-22049287
Coord A exon
chr3:22049697-22049882
Coord C2 exon
chr3:22050059-22050172
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCATGTGTGCCCCAGGCT
3' ss Score
7.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TTTCCGGTGCGACTGTGCGGACACGGGTTACGAAGGCGCGCGCTGTGAGCAGGAGGTGCTGGAGTGCGCCTCTGCGCCCTGCGTGCACAACGCATCCTGCCTCGACGGCTTCCGGAGCTTCCGCTGCCTCTGCTGGCCAG
Seq A exon
GCTTCAGTGGAGAGCGGTGCGAAGTGGATGAGGATGAGTGTGCATCGGATCCCTGTCATAATGGGGGCCGGTGCTCGCAGCGCTCTGACCCGACCTTGTATGGGGGTGTTCAGGCCATCTTCCCCGGAGCCTTCAGCTTCAGCCAAGCCGCTGGCTTCCTTTGCAGCTGTCCTCCGGGCTTTGCTG
Seq C2 exon
GGGATGACTGCAGCGTGGACGTGAATGAGTGTGCCTCAGAGCCATGTCTCAACGGAGGTAGCTGCCAGGACCTGCCCAATGGTTTCCAGTGCTACTGTCAGGATGGATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025498-'5-4,'5-3,6-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(16.1=7.9),PF0000822=EGF=PU(94.2=77.8)
C2:
PF0000822=EGF=PD(3.8=5.1),PF0000822=EGF=PU(90.3=71.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGGTGCGACTGTGC
R:
ATCCATCCTGACAGTAGCACT
Band lengths:
248-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]