RnoEX6016849 @ rn6
Exon Skipping
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37702381-37704806:-
Coord C1 exon
chr3:37704702-37704806
Coord A exon
chr3:37702616-37702720
Coord C2 exon
chr3:37702381-37702485
Length
105 bp
Sequences
Splice sites
3' ss Seq
GTCCTATTCTCTCTCAACAGCTT
3' ss Score
10.34
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
AAAAAGTACAAGATTCAGTATGAAAAGATGAAGGACAAGTATACACCAGTTGCAGACACGCCAATCCTCATCAGAGCCAAGAGAGCTTACTGGAACGCCAGCGAT
Seq A exon
CTTCGCTACAAAGAAACATTTCAAAAGACGAAAGGGAAATATCACACTGTGAAGGACGCCCTGGACATCGTGTATCATCGCAAAGTCACCGACGACATCAGTAAA
Seq C2 exon
GTGAAATACAAGGAAAACTACATGAGCCAGCTGGGAATCTGGAGTTCCATTCCTGATCGCCCTGAACATTTCCACCACCGGGCAGTCACTGATGCCGTCAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783-'121-130,'121-129,122-130=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(42.3=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
PF0088013=Nebulin=PD(37.9=31.4)
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCAGTATGAAAAGATGAAGGAC
R:
GACGGCATCAGTGACTGCC
Band lengths:
194-299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]