RnoEX6022835 @ rn6
Exon Skipping
Gene
ENSRNOG00000009597 | Cyp4a1
Description
cytochrome P450, family 4, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:68945]
Coordinates
chr5:134500123-134502941:+
Coord C1 exon
chr5:134500123-134500313
Coord A exon
chr5:134500390-134500523
Coord C2 exon
chr5:134502877-134502941
Length
134 bp
Sequences
Splice sites
3' ss Seq
CACATTGGACTTTATTTCAGGGA
3' ss Score
6.75
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
ATGGAGAATGGGGACAGCTTGTCTGACAAGGACCTACGTGCTGAGGTGGACACATTTATGTTCGAGGGTCATGACACCACAGCCAGTGGAGTCTCCTGGATCTTCTATGCTCTGGCCACACACCCTGAGCACCAACAAAGATGCAGAGAGGAAGTTCAGAGTGTCCTGGGGGATGGGTCCTCCATTACCTG
Seq A exon
GGATCACCTGGACCAGATTCCCTACACCACCATGTGTATCAAGGAGGCCCTGAGGCTTTACCCACCTGTTCCAGGCATTGTCAGAGAACTCAGCACATCTGTCACCTTCCCTGATGGGCGCTCTTTACCCAAGG
Seq C2 exon
GTATCCAAGTCACACTCTCCATTTATGGTCTCCACCACAACCCGAAGGTGTGGCCAAACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009597-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.9=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGACAGCTTGTCTGACAA
R:
CTGGGTTTGGCCACACCTTC
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]