RnoEX6022839 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134514897-134519332:-
Coord C1 exon
chr5:134519205-134519332
Coord A exon
chr5:134515286-134515410
Coord C2 exon
chr5:134514897-134515048
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTCTGGATTCCAGGAC
3' ss Score
9.55
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGAAAGGCCTACTAGTTCTGGATGGGCCAAAATGGTTCCAGCACCGCAAGCTGCTCACACCTGGCTTCCATTATGATGTGCTGAAGCCCTATGTGGCCATATTTGCTGAGTCCACACGTATGATGCTG
Seq A exon
GACAAGTGGGAGAAAAAGGCTAGTGAAAATAAGAGCTTTGACATCTTCTGTGACGTAGGCCACATGGCCCTGGACACCCTCATGAAGTGCACCTTCGGCAAAGGAGACAGCGGCCTAGGCCACAG
Seq C2 exon
AGACAACAGCTACTACCTGGCGGTCAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACTCCACATGGCCGCCGCTTCCTGCGGGCCTGCAAGATAGCCCATGACCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'7-5,'7-4,8-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
PF0006717=p450=FE(9.0=100)
C2:
PF0006717=p450=FE(11.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGCCAAAATGGTTCCA
R:
GGTCATGGGCTATCTTGCAGG
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]