RnoEX6030760 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14499029-14505501:+
Coord C1 exon
chr7:14499029-14499153
Coord A exon
chr7:14501713-14501980
Coord C2 exon
chr7:14505435-14505501
Length
268 bp
Sequences
Splice sites
3' ss Seq
CACAGCCCTTCTCTCTGCAGGAA
3' ss Score
11.79
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTAAATGGCGGCGGCATCTGGCAGAGGGCTCGGTGACCTCCTTTGACATGTTCGAGCACGTCAGCCTCATGACCCTGGACAGCCTTCAGAAATGTGTGTTCAGTTACAGTAGTGACTGCCAGGA
Seq A exon
GAAATTGAGCGATTACATCTCCTCCATTATTGAACTGAGCGCTCTGGTGGTGCGGCGCCAATACCGCTTGCATCACTATCTGGATTTCATCTACTACCTCACTGCCGACGGGCGGCGCTTCCGCCAGGCCTGCGACACGGTGCACAACTTCACTACTGAAGTCATACAGCAGCGGCGGCGGGCGCTGCGCGAGCTGGGTGCCGAGGCATGGCTGAAGGCCAAGCAGGGCAAGACCTTGGACTTCATAGACGTGCTGCTGCTGGCCAAG
Seq C2 exon
GATGAAGAGGGGAAAGAATTATCTGACGAAGACATCCGGGCTGAGGCGGATACGTTCATGTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(8.8=100)
A:
PF0006717=p450=FE(19.1=100)
C2:
PF0006717=p450=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCTGGCAGAGGGCTC
R:
ACATGAACGTATCCGCCTCAG
Band lengths:
172-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]