RnoEX6034716 @ rn6
Exon Skipping
Gene
ENSRNOG00000033624 | Zfp426
Description
zinc finger protein 426 [Source:RGD Symbol;Acc:1590942]
Coordinates
chr8:21489256-21492801:-
Coord C1 exon
chr8:21492774-21492801
Coord A exon
chr8:21490255-21490337
Coord C2 exon
chr8:21489256-21489382
Length
83 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTTTCCATAAGGTC
3' ss Score
8.27
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGGCAGCTCCTGATTCATTGTCCCACG
Seq A exon
GTCCTTCAGGGGACTCAGTCTGCCTTCAGGAAGAAAAAGTATCAGCCGAAATGATGTTGGTTGATTGCCTGACAAATTATCAG
Seq C2 exon
GAGTTAGTGAGCTTTGATGATGTGATTGTGGACTTTACCCAAGAGGAGTGGACCTCACTGAACCCAGATCAGAGAACCCTCTACCGAGAGGTGATGCTGGAGAACTACAAGAACCTGGCCACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033624-'3-5,'3-4,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
ENSRNOT00000077465fB16939
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCTCCTGATTCATTGT
R:
CTGTGGCCAGGTTCTTGTAGT
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]