RnoEX6038523 @ rn6
Exon Skipping
Gene
ENSRNOG00000046834 | C3
Description
complement C3 [Source:RGD Symbol;Acc:2232]
Coordinates
chr9:9723866-9724329:+
Coord C1 exon
chr9:9723866-9723960
Coord A exon
chr9:9724058-9724140
Coord C2 exon
chr9:9724239-9724329
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATTCCTCATATTCTTGCAGCAT
3' ss Score
8
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ACCCCGGACGGCGTTCCCATCAAGAGAGACATTCTATCTTCCCACAACCAATATGGCATCTTGCCTTTGTCTTGGAACATTCCAGAACTGGTCAA
Seq A exon
CATGGGGCAGTGGAAGATCCGAGCCTTCTATGAACATGCACCAAAGCAGACCTTCTCTGCAGAGTTTGAGGTGAAGGAATACG
Seq C2 exon
TGCTGCCCAGTTTCGAAGTCCTGGTGGAGCCTACAGAGAAATTTTATTACATCGATGACCCAAAGGGCCTGGAAGTTTCCATCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046834-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(32.3=100)
A:
PF0183514=A2M_N=PD(25.0=82.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCGTTCCCATCAAGAG
R:
AAACTTCCAGGCCCTTTGGGT
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]