RnoEX6039683 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60318035-60324121:-
Coord C1 exon
chr9:60323994-60324121
Coord A exon
chr9:60321228-60321306
Coord C2 exon
chr9:60318035-60318259
Length
79 bp
Sequences
Splice sites
3' ss Seq
CAGTTATTTTGCTGTTTCAGGTT
3' ss Score
9.11
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ACTGTTCGTCTGGGAATGTTTGAGATGCACTGTGAGGAACTGATCAGATCCTTGGTGAAGCGGGCAGATATCATCTGTGGGAAACTGATAGCCAAGATGTTCCGAGATCACCAGGAAGTAAACACAAT
Seq A exon
GTTATGCGAGGAGTTTGAGAAGATAGCTGAAAAGGCTCTGAGTACGCCTCCAAACACAGCCGAGCTCATGGAGATGAAG
Seq C2 exon
GCTCACATTCAGAAAGTGGAGACAACTGACATGTTGGACCTGGGACAGAGATTAGTGGATTCTAAAAACTGCCTGGCCTTCCTCATCGAATGTGTCAACTTTTCTCCTGCAGACATCAGACTAAATAACAGTGTTTTCCAGTGGTATGGCAGAATGGGAGAGATTTTTGACGAGCACAGGAAAATCATTAAGGACAAAACAGAACAGTATCAAGAAGGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGTGAAGCGGGCAGATAT
R:
CATTCGATGAGGAAGGCCAGG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]